Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers.
Identifieur interne : 004724 ( Main/Exploration ); précédent : 004723; suivant : 004725Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers.
Auteurs : M T Cervera [Belgique] ; V. Storme ; B. Ivens ; J. Gusmão ; B H Liu ; V. Hostyn ; J. Van Slycken ; M. Van Montagu ; W. BoerjanSource :
- Genetics [ 0016-6731 ] ; 2001.
Descripteurs français
- KwdFr :
- ADN (métabolisme), Arbres (génétique), Cartographie chromosomique (MeSH), Croisements génétiques (MeSH), Gènes de plante (MeSH), Hétérozygote (MeSH), Liaison génétique (MeSH), Marqueurs génétiques (génétique), Modèles génétiques (MeSH), Modèles statistiques (MeSH), Polymorphisme génétique (MeSH), Répétitions microsatellites (MeSH), Sites étiquetés par des séquences (MeSH).
- MESH :
English descriptors
- KwdEn :
- Chromosome Mapping (MeSH), Crosses, Genetic (MeSH), DNA (metabolism), Genes, Plant (MeSH), Genetic Linkage (MeSH), Genetic Markers (genetics), Heterozygote (MeSH), Microsatellite Repeats (MeSH), Models, Genetic (MeSH), Models, Statistical (MeSH), Polymorphism, Genetic (MeSH), Sequence Tagged Sites (MeSH), Trees (genetics).
- MESH :
- chemical , genetics : Genetic Markers.
- chemical , metabolism : DNA.
- genetics : Trees.
- Chromosome Mapping, Crosses, Genetic, Genes, Plant, Genetic Linkage, Heterozygote, Microsatellite Repeats, Models, Genetic, Models, Statistical, Polymorphism, Genetic, Sequence Tagged Sites.
Abstract
Populus deltoides, P. nigra, and P. trichocarpa are the most important species for poplar breeding programs worldwide. In addition, Populus has become a model for fundamental research on trees. Linkage maps were constructed for these three species by analyzing progeny of two controlled crosses sharing the same female parent, Populus deltoides cv. S9-2 x P. nigra cv. Ghoy and P. deltoides cv. S9-2 x P. trichocarpa cv. V24. The two-way pseudotestcross mapping strategy was used to construct the maps. Amplified fragment length polymorphism (AFLP) markers that segregated 1:1 were used to form the four parental maps. Microsatellites and sequence-tagged sites were used to align homoeologous groups between the maps and to merge linkage groups within the individual maps. Linkage analysis and alignment of the homoeologous groups resulted in 566 markers distributed over 19 groups for P. deltoides covering 86% of the genome, 339 markers distributed over 19 groups for P. trichocarpa covering 73%, and 369 markers distributed over 28 groups for P. nigra covering 61%. Several tests for randomness showed that the AFLP markers were randomly distributed over the genome.
PubMed: 11404342
PubMed Central: PMC1461694
Affiliations:
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Storme</name></author><author><name sortKey="Ivens, B" sort="Ivens, B" uniqKey="Ivens B" first="B" last="Ivens">B. Ivens</name></author><author><name sortKey="Gusmao, J" sort="Gusmao, J" uniqKey="Gusmao J" first="J" last="Gusmão">J. Gusmão</name></author><author><name sortKey="Liu, B H" sort="Liu, B H" uniqKey="Liu B" first="B H" last="Liu">B H Liu</name></author><author><name sortKey="Hostyn, V" sort="Hostyn, V" uniqKey="Hostyn V" first="V" last="Hostyn">V. Hostyn</name></author><author><name sortKey="Van Slycken, J" sort="Van Slycken, J" uniqKey="Van Slycken J" first="J" last="Van Slycken">J. Van Slycken</name></author><author><name sortKey="Van Montagu, M" sort="Van Montagu, M" uniqKey="Van Montagu M" first="M" last="Van Montagu">M. Van Montagu</name></author><author><name sortKey="Boerjan, W" sort="Boerjan, W" uniqKey="Boerjan W" first="W" last="Boerjan">W. Boerjan</name></author></analytic><series><title level="j">Genetics</title><idno type="ISSN">0016-6731</idno><imprint><date when="2001" type="published">2001</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chromosome Mapping (MeSH)</term><term>Crosses, Genetic (MeSH)</term><term>DNA (metabolism)</term><term>Genes, Plant (MeSH)</term><term>Genetic Linkage (MeSH)</term><term>Genetic Markers (genetics)</term><term>Heterozygote (MeSH)</term><term>Microsatellite Repeats (MeSH)</term><term>Models, Genetic (MeSH)</term><term>Models, Statistical (MeSH)</term><term>Polymorphism, Genetic (MeSH)</term><term>Sequence Tagged Sites (MeSH)</term><term>Trees (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN (métabolisme)</term><term>Arbres (génétique)</term><term>Cartographie chromosomique (MeSH)</term><term>Croisements génétiques (MeSH)</term><term>Gènes de plante (MeSH)</term><term>Hétérozygote (MeSH)</term><term>Liaison génétique (MeSH)</term><term>Marqueurs génétiques (génétique)</term><term>Modèles génétiques (MeSH)</term><term>Modèles statistiques (MeSH)</term><term>Polymorphisme génétique (MeSH)</term><term>Répétitions microsatellites (MeSH)</term><term>Sites étiquetés par des séquences (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Genetic Markers</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>DNA</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Trees</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Arbres</term><term>Marqueurs génétiques</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>ADN</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Chromosome Mapping</term><term>Crosses, Genetic</term><term>Genes, Plant</term><term>Genetic Linkage</term><term>Heterozygote</term><term>Microsatellite Repeats</term><term>Models, Genetic</term><term>Models, Statistical</term><term>Polymorphism, Genetic</term><term>Sequence Tagged Sites</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term><term>Croisements génétiques</term><term>Gènes de plante</term><term>Hétérozygote</term><term>Liaison génétique</term><term>Modèles génétiques</term><term>Modèles statistiques</term><term>Polymorphisme génétique</term><term>Répétitions microsatellites</term><term>Sites étiquetés par des séquences</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Populus deltoides, P. nigra, and P. trichocarpa are the most important species for poplar breeding programs worldwide. In addition, Populus has become a model for fundamental research on trees. Linkage maps were constructed for these three species by analyzing progeny of two controlled crosses sharing the same female parent, Populus deltoides cv. S9-2 x P. nigra cv. Ghoy and P. deltoides cv. S9-2 x P. trichocarpa cv. V24. The two-way pseudotestcross mapping strategy was used to construct the maps. Amplified fragment length polymorphism (AFLP) markers that segregated 1:1 were used to form the four parental maps. Microsatellites and sequence-tagged sites were used to align homoeologous groups between the maps and to merge linkage groups within the individual maps. Linkage analysis and alignment of the homoeologous groups resulted in 566 markers distributed over 19 groups for P. deltoides covering 86% of the genome, 339 markers distributed over 19 groups for P. trichocarpa covering 73%, and 369 markers distributed over 28 groups for P. nigra covering 61%. Several tests for randomness showed that the AFLP markers were randomly distributed over the genome.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">11404342</PMID><DateCompleted><Year>2001</Year><Month>09</Month><Day>27</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0016-6731</ISSN><JournalIssue CitedMedium="Print"><Volume>158</Volume><Issue>2</Issue><PubDate><Year>2001</Year><Month>Jun</Month></PubDate></JournalIssue><Title>Genetics</Title><ISOAbbreviation>Genetics</ISOAbbreviation></Journal><ArticleTitle>Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers.</ArticleTitle><Pagination><MedlinePgn>787-809</MedlinePgn></Pagination><Abstract><AbstractText>Populus deltoides, P. nigra, and P. trichocarpa are the most important species for poplar breeding programs worldwide. In addition, Populus has become a model for fundamental research on trees. Linkage maps were constructed for these three species by analyzing progeny of two controlled crosses sharing the same female parent, Populus deltoides cv. S9-2 x P. nigra cv. Ghoy and P. deltoides cv. S9-2 x P. trichocarpa cv. V24. The two-way pseudotestcross mapping strategy was used to construct the maps. Amplified fragment length polymorphism (AFLP) markers that segregated 1:1 were used to form the four parental maps. Microsatellites and sequence-tagged sites were used to align homoeologous groups between the maps and to merge linkage groups within the individual maps. Linkage analysis and alignment of the homoeologous groups resulted in 566 markers distributed over 19 groups for P. deltoides covering 86% of the genome, 339 markers distributed over 19 groups for P. trichocarpa covering 73%, and 369 markers distributed over 28 groups for P. nigra covering 61%. Several tests for randomness showed that the AFLP markers were randomly distributed over the genome.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Cervera</LastName><ForeName>M T</ForeName><Initials>MT</Initials><AffiliationInfo><Affiliation>Vakgroep Moleculaire Genetica en Departement Plantengenetica, Vlaams Interuniversitair Instituut voor Biotechnologie, Universiteit Gent, Ledeganckstraat 35, B-9000 Gent, Belgium.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Storme</LastName><ForeName>V</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Ivens</LastName><ForeName>B</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Gusmão</LastName><ForeName>J</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>B H</ForeName><Initials>BH</Initials></Author><Author ValidYN="Y"><LastName>Hostyn</LastName><ForeName>V</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Van Slycken</LastName><ForeName>J</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Van Montagu</LastName><ForeName>M</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Boerjan</LastName><ForeName>W</ForeName><Initials>W</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Genetics</MedlineTA><NlmUniqueID>0374636</NlmUniqueID><ISSNLinking>0016-6731</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical><Chemical><RegistryNumber>9007-49-2</RegistryNumber><NameOfSubstance UI="D004247">DNA</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D003433" MajorTopicYN="N">Crosses, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004247" MajorTopicYN="N">DNA</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="Y">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008040" MajorTopicYN="Y">Genetic Linkage</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006579" MajorTopicYN="N">Heterozygote</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018895" MajorTopicYN="Y">Microsatellite Repeats</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008957" MajorTopicYN="N">Models, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015233" MajorTopicYN="N">Models, Statistical</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011110" MajorTopicYN="Y">Polymorphism, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016324" MajorTopicYN="N">Sequence Tagged Sites</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014197" MajorTopicYN="N">Trees</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2001</Year><Month>6</Month><Day>19</Day><Hour>10</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2001</Year><Month>9</Month><Day>28</Day><Hour>10</Hour><Minute>1</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2001</Year><Month>6</Month><Day>19</Day><Hour>10</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">11404342</ArticleId><ArticleId IdType="pmc">PMC1461694</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Proc Natl Acad Sci U S A. 1991 Nov 1;88(21):9828-32</Citation><ArticleIdList><ArticleId IdType="pubmed">1682921</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1999 Jan;151(1):321-30</Citation><ArticleIdList><ArticleId IdType="pubmed">9872970</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1988 Dec;120(4):947-58</Citation><ArticleIdList><ArticleId 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flamande</li></region><settlement><li>Gand</li></settlement><orgName><li>Université de Gand</li></orgName></list><tree><noCountry><name sortKey="Boerjan, W" sort="Boerjan, W" uniqKey="Boerjan W" first="W" last="Boerjan">W. Boerjan</name><name sortKey="Gusmao, J" sort="Gusmao, J" uniqKey="Gusmao J" first="J" last="Gusmão">J. Gusmão</name><name sortKey="Hostyn, V" sort="Hostyn, V" uniqKey="Hostyn V" first="V" last="Hostyn">V. Hostyn</name><name sortKey="Ivens, B" sort="Ivens, B" uniqKey="Ivens B" first="B" last="Ivens">B. Ivens</name><name sortKey="Liu, B H" sort="Liu, B H" uniqKey="Liu B" first="B H" last="Liu">B H Liu</name><name sortKey="Storme, V" sort="Storme, V" uniqKey="Storme V" first="V" last="Storme">V. Storme</name><name sortKey="Van Montagu, M" sort="Van Montagu, M" uniqKey="Van Montagu M" first="M" last="Van Montagu">M. Van Montagu</name><name sortKey="Van Slycken, J" sort="Van Slycken, J" uniqKey="Van Slycken J" first="J" last="Van Slycken">J. Van Slycken</name></noCountry><country name="Belgique"><region name="Région flamande"><name sortKey="Cervera, M T" sort="Cervera, M T" uniqKey="Cervera M" first="M T" last="Cervera">M T Cervera</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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